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RNA triggers chronic stress during neuronal aging.

Kevin Rhine, Elle Epstein, Natasha M Carlson, Xuezhen Ge, Orel Mizrahi, Anika Kamat, Anita Hermann, William R Brothers, John Ravits, Eric J Bennett, Gülçin Pekkurnaz, Gene W Yeo

bioRxiv : the preprint server for biology · 2025

Abstract

Neurodegenerative diseases are linked with dysregulation of the integrated stress response (ISR), which coordinates cellular homeostasis during and after stress events. Cellular stress can arise from several sources, but there is significant disagreement about which stress might contribute to aging and neurodegeneration. Here, we leverage directed transdifferentiation of human fibroblasts into aged neurons to determine the source of ISR activation. We demonstrate that increased accumulation of cytoplasmic double-stranded RNA (dsRNA) activates the eIF2α kinase PKR, which in turn triggers the ISR in aged neurons and leads to sequestration of dsRNA in stress granules. Aged neurons accumulate endogenous mitochondria-derived dsRNA that directly binds to PKR. This mitochondrial dsRNA leaks through damaged mitochondrial membranes and forms cytoplasmic foci in aged neurons. Finally, we demonstrate that PKR inhibition leads to the cessation of stress, resumption of cellular translation, and restoration of RNA-binding protein expression. Together, our results identify a source of RNA stress that destabilizes aged neurons and may contribute to neurodegeneration.

Potentially related datasets 3

These accessions were text-mined from the PMC full text. They may be referenced for comparison, cited from other studies, or otherwise mentioned without being primary data for this paper.

Accession Source Title
GSE301408 GSE · GEO GEO ↗ Mitochondrial double-stranded RNA triggers chronic stress in aged neurons
PXD066264 PXD · PRIDE No title in the index
PXD066084 PXD · PRIDE No title in the index

Analysis pipelines 1

Pipeline Assay Steps Dataset
GSE301408 eCLIP Data Processing geo_data_processing eCLIP 3 GSE301408
Funding 6 grants
Grant Funder
R01 HG004659 NHGRI NIH HHS (United States)
R01 NS103172 NINDS NIH HHS (United States)
R35 GM148339 NIGMS NIH HHS (United States)
T32 EB009380 NIBIB NIH HHS (United States)
R35 GM128823 NIGMS NIH HHS (United States)
R01 NS069566 NINDS NIH HHS (United States)