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ENCSR819XBT

ENCSR ENCODE
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eCLIP experiment on K562 against AATF

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR290JPJ

Summary

eCLIP of AATF in Homo sapiens K562

Analysis

View Data Processing
Analysis page is available for ENCSR819XBT.

ENCODE Metadata

Total file size: 3.1 GB
Assay: eCLIP
Target: AATF
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (3)

A protein-RNA interaction atlas of the ribosome biogenesis factor AATF.
Scientific reports · 2019
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF473EVT ENCFF473EVT.bam bam (alignments); assembly: GRCh38 alignments GRCh38 150.9 MB link
ENCFF645UGJ ENCFF645UGJ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 87.6 MB link
ENCFF783AKB ENCFF783AKB.bam bam (alignments); assembly: hg19 alignments hg19 93.0 MB link
ENCFF906MGJ ENCFF906MGJ.bam bam (alignments); assembly: hg19 alignments hg19 157.3 MB link
ENCFF349HTU ENCFF349HTU.bed bed (peaks); assembly: GRCh38 peaks GRCh38 315.9 KB link
ENCFF931DET ENCFF931DET.bed bed (peaks); assembly: GRCh38 peaks GRCh38 585.9 KB link
ENCFF955LYD ENCFF955LYD.bed bed (peaks); assembly: GRCh38 peaks GRCh38 24.9 KB link
ENCFF415HBM ENCFF415HBM.bed bed (peaks); assembly: hg19 peaks hg19 332.1 KB link
ENCFF514KIW ENCFF514KIW.bed bed (peaks); assembly: hg19 peaks hg19 24.5 KB link
ENCFF715LDJ ENCFF715LDJ.bed bed (peaks); assembly: hg19 peaks hg19 606.4 KB link
ENCFF969VIX ENCFF969VIX.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.1 MB link
ENCFF978PBJ ENCFF978PBJ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 651.9 KB link
ENCFF009KOU ENCFF009KOU.bigBed bigBed (peaks); assembly: hg19 peaks hg19 680.4 KB link
ENCFF116CFF ENCFF116CFF.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.1 MB link
ENCFF197MAL ENCFF197MAL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 6.7 MB link
ENCFF681TZF ENCFF681TZF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 4.3 MB link
ENCFF123JMS ENCFF123JMS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 6.8 MB link
ENCFF228NKX ENCFF228NKX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 4.4 MB link
ENCFF372WIF ENCFF372WIF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 4.5 MB link
ENCFF745OPH ENCFF745OPH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 7.0 MB link
ENCFF370NUA ENCFF370NUA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 4.7 MB link
ENCFF635KBS ENCFF635KBS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 9.5 MB link
ENCFF057BVQ ENCFF057BVQ.fastq fastq (reads) reads 604.2 MB link
ENCFF268XIQ ENCFF268XIQ.fastq fastq (reads) reads 651.8 MB link
ENCFF647ZMG ENCFF647ZMG.fastq fastq (reads) reads 717.1 MB link
ENCFF990ZCZ ENCFF990ZCZ.fastq fastq (reads) reads 663.6 MB link