A protein-RNA interaction atlas of the ribosome biogenesis factor AATF.
Rainer W J Kaiser, Michael Ignarski, Eric L Van Nostrand, Christian K Frese, Manaswita Jain, Sadrija Cukoski, Heide Heinen, Melanie Schaechter, Lisa Seufert, Konstantin Bunte, Peter Frommolt, Patrick Keller, Mark Helm, Katrin Bohl, Martin Höhne, Bernhard Schermer, Thomas Benzing, Katja Höpker, Christoph Dieterich, Gene W Yeo, Roman-Ulrich Müller, Francesca Fabretti
Scientific reports · 2019 · Vol. 9 (1) · pp. 11071
Abstract
AATF is a central regulator of the cellular outcome upon p53 activation, a finding that has primarily been attributed to its function as a transcription factor. Recent data showed that AATF is essential for ribosome biogenesis and plays a role in rRNA maturation. AATF has been implicated to fulfil this role through direct interaction with rRNA and was identified in several RNA-interactome capture experiments. Here, we provide a first comprehensive analysis of the RNA bound by AATF using CLIP-sequencing. Interestingly, this approach shows predominant binding of the 45S pre-ribosomal RNA precursor molecules. Furthermore, AATF binds to mRNAs encoding for ribosome biogenesis factors as well as snoRNAs. These findings are complemented by an in-depth analysis of the protein interactome of AATF containing a large set of proteins known to play a role in rRNA maturation with an emphasis on the protein-RNA-complexes known to be required for the generation of the small ribosomal subunit (SSU). In line with this finding, the binding sites of AATF within the 45S rRNA precursor localize in close proximity to the SSU cleavage sites. Consequently, our multilayer analysis of the protein-RNA interactome of AATF reveals this protein to be an important hub for protein and RNA interactions involved in ribosome biogenesis.
Linked datasets 3
Best practices for eCLIP experiments and analysis [uncertain quality]
Homo sapiens
309 data files
| File | Type | Size |
|---|---|---|
| 264_01.R1.fastq.gz | OTHER | 203.3 MB |
| 264_02.R1.fastq.gz | OTHER | 127.3 MB |
| 264_INPUT_GAGATTCC-AGGCGAAG_L001_R1.unassigned.barcoded.fas… | OTHER | 287.1 MB |
| 266_01.R1.fastq.gz | OTHER | 282.9 MB |
| 266_02.R1.fastq.gz | OTHER | 289.5 MB |
| 266_INPUT_ATTCAGAA-GGCTCTGA_L006_R1.unassigned.barcoded.fas… | OTHER | 646.0 MB |
| 299_01.R1.fastq.gz | OTHER | 844.6 MB |
| 299_02.R1.fastq.gz | OTHER | 1.2 GB |
| 299_INPUT_ATTACTCG-AGG_L003_R1.unassigned.barcoded.fastq.gz | OTHER | 301.1 MB |
| 332_01.R1.fastq.gz | OTHER | 385.2 MB |
| 332_02.R1.fastq.gz | OTHER | 352.5 MB |
| 332_INPUT_GAATTCGT-TATAGCCT_L002_R1.unassigned.barcoded.fas… | OTHER | 612.8 MB |
| 355_01_4000.R1.fastq.gz | OTHER | 818.0 MB |
| 355_02_4000.R1.fastq.gz | OTHER | 760.6 MB |
| 355_INPUT_ATTCAGAA-AGGCGAAG_L001_R1.unassigned.barcoded.fas… | OTHER | 136.3 MB |
| 366_01.R1.fastq.gz | OTHER | 487.5 MB |
| 366_02.R1.fastq.gz | OTHER | 479.6 MB |
| 366_INPUT_ATTACTCG-CCTATCCT_L006_R1.unassigned.barcoded.fas… | OTHER | 529.1 MB |
| 415_01.R1.fastq.gz | OTHER | 475.3 MB |
| 415_02.R1.fastq.gz | OTHER | 354.4 MB |
| 415_INPUT_ATTCAGAA-ATAGAGGC_L006_R1.unassigned.barcoded.fas… | OTHER | 675.6 MB |
| 417_01.R1.fastq.gz | OTHER | 913.4 MB |
| 417_02.R1.fastq.gz | OTHER | 1.0 GB |
| 417_INPUT_S56_L006_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1017.0 MB |
| 419_01.R1.fastq.gz | OTHER | 1.1 GB |
| 419_02.R1.fastq.gz | OTHER | 1.0 GB |
| 419_INPUT_S14_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 932.5 MB |
| 451_01_4000.R1.fastq.gz | OTHER | 880.5 MB |
| 451_02_4000.R1.fastq.gz | OTHER | 1.6 GB |
| 451_INPUT_4000_S82_L006_R1_001.unassigned.barcoded.fastq.gz | OTHER | 321.5 MB |
| 459_01.R1.fastq.gz | OTHER | 881.2 MB |
| 459_02.R1.fastq.gz | OTHER | 643.9 MB |
| 459_INPUT_S30_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 984.7 MB |
| 463_01.R1.fastq.gz | OTHER | 315.9 MB |
| 463_02.R1.fastq.gz | OTHER | 277.2 MB |
| 463_INPUT_GAGATTCC-CCTATCCT_L003_R1.unassigned.barcoded.fas… | OTHER | 372.5 MB |
| 471_01.R1.fastq.gz | OTHER | 250.4 MB |
| 471_02.R1.fastq.gz | OTHER | 580.5 MB |
| 471_INPUT_S28_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 482.4 MB |
| 485_01_4000.R1.fastq.gz | OTHER | 3.4 GB |
| 485_02_4000.R1.fastq.gz | OTHER | 2.6 GB |
| 485_INPUT_S42_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.6 GB |
| 496_01.R1.fastq.gz | OTHER | 1.1 GB |
| 496_02.R1.fastq.gz | OTHER | 1.1 GB |
| 496_INPUT_S69_L008_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.0 GB |
| 498_01.R1.fastq.gz | OTHER | 896.5 MB |
| 498_02.R1.fastq.gz | OTHER | 735.4 MB |
| 498_INPUT_S46_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 972.8 MB |
| 499_01.R1.fastq.gz | OTHER | 982.6 MB |
| 499_02.R1.fastq.gz | OTHER | 1016.3 MB |
| 499_INPUT_S48_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 850.1 MB |
| 510_01.R1.fastq.gz | OTHER | 760.9 MB |
| 510_02.R1.fastq.gz | OTHER | 765.4 MB |
| 510_INPUT_S4_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.1 GB |
| 512_01.R1.fastq.gz | OTHER | 1.1 GB |
| 512_02.R1.fastq.gz | OTHER | 1.1 GB |
| 512_INPUT_S67_L008_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.1 GB |
| 513_01.R1.fastq.gz | OTHER | 744.3 MB |
| 513_02.R1.fastq.gz | OTHER | 767.8 MB |
| 513_INPUT_S45_L004_R1_001.unassigned.barcoded.fastq.gz | OTHER | 998.9 MB |
| 520_01.R1.fastq.gz | OTHER | 603.6 MB |
| 520_02.R1.fastq.gz | OTHER | 706.1 MB |
| 520_INPUT_S24_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 747.8 MB |
| 523_01.R1.fastq.gz | OTHER | 816.2 MB |
| 523_02.R1.fastq.gz | OTHER | 910.6 MB |
| 523_INPUT_S6_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 996.8 MB |
| 529_01.R1.fastq.gz | OTHER | 963.1 MB |
| 529_02.R1.fastq.gz | OTHER | 688.0 MB |
| 529_INPUT_S16_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 852.8 MB |
| 531_01.R1.fastq.gz | OTHER | 908.5 MB |
| 531_02.R1.fastq.gz | OTHER | 875.8 MB |
| 531_INPUT_S8_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 933.7 MB |
| 534_01.R1.fastq.gz | OTHER | 806.6 MB |
| 534_02.R1.fastq.gz | OTHER | 500.0 MB |
| 534_INPUT_S2_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 644.6 MB |
| 535_01.R1.fastq.gz | OTHER | 719.9 MB |
| 535_02.R1.fastq.gz | OTHER | 866.2 MB |
| 535_INPUT_S57_L006_R1_001.unassigned.barcoded.fastq.gz | OTHER | 695.3 MB |
| 536_01.R1.fastq.gz | OTHER | 693.7 MB |
| 536_02.R1.fastq.gz | OTHER | 687.3 MB |
| 536_INPUT_S23_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 866.0 MB |
| 541_01.R1.fastq.gz | OTHER | 518.8 MB |
| 541_02.R1.fastq.gz | OTHER | 698.8 MB |
| 541_INPUT_S61_L007_R1_001.unassigned.barcoded.fastq.gz | OTHER | 607.0 MB |
| 547_01.R1.fastq.gz | OTHER | 1020.2 MB |
| 547_02.R1.fastq.gz | OTHER | 1.0 GB |
| 547_INPUT_S5_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.1 GB |
| 555_01.R1.fastq.gz | OTHER | 534.4 MB |
| 555_02.R1.fastq.gz | OTHER | 977.8 MB |
| 555_INPUT_S5_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.3 GB |
| 567_01.R1.fastq.gz | OTHER | 576.2 MB |
| 567_02.R1.fastq.gz | OTHER | 684.5 MB |
| 567_INPUT_S52_L006_R1_001.unassigned.barcoded.fastq.gz | OTHER | 798.5 MB |
| 588_01.R1.fastq.gz | OTHER | 726.0 MB |
| 588_02.R1.fastq.gz | OTHER | 841.6 MB |
| 588_INPUT_S52_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.0 GB |
| 598_01.R1.fastq.gz | OTHER | 513.2 MB |
| 598_02.R1.fastq.gz | OTHER | 737.3 MB |
| 598_INPUT_S18_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 932.4 MB |
| 609_01.R1.fastq.gz | OTHER | 1.2 GB |
| 609_02.R1.fastq.gz | OTHER | 946.4 MB |
| 609_INPUT_S39_L004_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.2 GB |
| 611_01.R1.fastq.gz | OTHER | 745.3 MB |
| 611_02.R1.fastq.gz | OTHER | 277.4 MB |
| 611_INPUT_S30_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 676.5 MB |
| 613_01.R1.fastq.gz | OTHER | 764.7 MB |
| 613_02.R1.fastq.gz | OTHER | 894.3 MB |
| 613_INPUT_S44_L004_R1_001.unassigned.barcoded.fastq.gz | OTHER | 882.6 MB |
| 616_01.R1.fastq.gz | OTHER | 757.2 MB |
| 616_02.R1.fastq.gz | OTHER | 815.1 MB |
| 616_INPUT_S6_L004_R1_001.unassigned.barcoded.fastq.gz | OTHER | 837.8 MB |
| 626_01.R1.fastq.gz | OTHER | 908.0 MB |
| 626_01.R2.fastq.gz | OTHER | 908.0 MB |
| 626_02.R1.fastq.gz | OTHER | 679.2 MB |
| 626_INPUT_S14_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 736.2 MB |
| 647_01.R1.fastq.gz | OTHER | 331.9 MB |
| 647_02.R1.fastq.gz | OTHER | 1.3 GB |
| 647_INPUT_S24_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 877.9 MB |
| 658_01.R1.fastq.gz | OTHER | 550.1 MB |
| 658_02.R1.fastq.gz | OTHER | 657.0 MB |
| 658_INPUT_S27_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 835.0 MB |
| 658_INPUT_S27_L003_R2_001.unassigned.barcoded.fastq.gz | OTHER | 835.0 MB |
| 662_01.R1.fastq.gz | OTHER | 1.1 GB |
| 662_02.R1.fastq.gz | OTHER | 882.5 MB |
| 662_INPUT_S7_L006_R1_001.unassigned.barcoded.fastq.gz | OTHER | 679.5 MB |
| 669_01.R1.fastq.gz | OTHER | 1.7 GB |
| 669_02.R1.fastq.gz | OTHER | 201.3 MB |
| 669_INPUT_S12_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 788.4 MB |
| 674_01.R1.fastq.gz | OTHER | 545.2 MB |
| 674_02.R1.fastq.gz | OTHER | 574.0 MB |
| 674_INPUT_S78_L004_R1_001.unassigned.barcoded.fastq.gz | OTHER | 806.4 MB |
| 674_INPUT_S78_L004_R2_001.unassigned.barcoded.fastq.gz | OTHER | 806.4 MB |
| 679_01.R1.fastq.gz | OTHER | 843.1 MB |
| 679_02.R1.fastq.gz | OTHER | 604.8 MB |
| 679_02.R2.fastq.gz | OTHER | 604.8 MB |
| 679_INPUT_S31_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 958.0 MB |
| 706_01.R1.fastq.gz | OTHER | 1.1 GB |
| 706_02.R1.fastq.gz | OTHER | 1.9 GB |
| 706_INPUT_S49_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 647.6 MB |
| 714_01.R1.fastq.gz | OTHER | 397.0 MB |
| 714_02.R1.fastq.gz | OTHER | 461.9 MB |
| 714_INPUT_S34_L004_R1_001.unassigned.barcoded.fastq.gz | OTHER | 532.5 MB |
| 721_01.R1.fastq.gz | OTHER | 1.1 GB |
| 721_02.R1.fastq.gz | OTHER | 735.5 MB |
| 721_INPUT_S77_L007_R1_001.unassigned.barcoded.fastq.gz | OTHER | 732.9 MB |
| 724_01.R1.fastq.gz | OTHER | 770.7 MB |
| 724_02.R1.fastq.gz | OTHER | 708.9 MB |
| 724_INPUT_S83_L008_R1_001.unassigned.barcoded.fastq.gz | OTHER | 647.5 MB |
| 739_01.R1.fastq.gz | OTHER | 911.7 MB |
| 739_02.R1.fastq.gz | OTHER | 870.9 MB |
| 739_INPUT_S112_L008_R1_001.unassigned.barcoded.fastq.gz | OTHER | 712.9 MB |
| 761_01.R1.fastq.gz | OTHER | 612.5 MB |
| 761_02.R1.fastq.gz | OTHER | 619.9 MB |
| 761_02.R2.fastq.gz | OTHER | 619.9 MB |
| 761_INPUT_S4_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 760.1 MB |
| SRR6458659_GSM2878474 | OTHER | 282.0 MB |
| SRR6458660_GSM2878475 | OTHER | 289.0 MB |
| SRR6458661_GSM2878476 | OTHER | 203.0 MB |
| SRR6458662_GSM2878477 | OTHER | 127.0 MB |
| SRR6458663_GSM2878478 | OTHER | 844.0 MB |
| SRR6458664_GSM2878479 | OTHER | 1.2 GB |
| SRR6458665_GSM2878480 | OTHER | 315.0 MB |
| SRR6458666_GSM2878481 | OTHER | 277.0 MB |
| SRR6458667_GSM2878482 | OTHER | 1.1 GB |
| SRR6458668_GSM2878483 | OTHER | 1.0 GB |
| SRR6458669_GSM2878484 | OTHER | 1.1 GB |
| SRR6458670_GSM2878485 | OTHER | 1.1 GB |
| SRR6458671_GSM2878486 | OTHER | 896.0 MB |
| SRR6458672_GSM2878487 | OTHER | 735.0 MB |
| SRR6458673_GSM2878488 | OTHER | 982.0 MB |
| SRR6458674_GSM2878489 | OTHER | 1016.0 MB |
| SRR6458675_GSM2878490 | OTHER | 1.1 GB |
| SRR6458676_GSM2878491 | OTHER | 1.0 GB |
| SRR6458677_GSM2878492 | OTHER | 881.0 MB |
| SRR6458678_GSM2878493 | OTHER | 643.0 MB |
| SRR6458679_GSM2878494 | OTHER | 250.0 MB |
| SRR6458680_GSM2878495 | OTHER | 580.0 MB |
| SRR6458681_GSM2878496 | OTHER | 760.0 MB |
| SRR6458682_GSM2878497 | OTHER | 765.0 MB |
| SRR6458683_GSM2878498 | OTHER | 744.0 MB |
| SRR6458684_GSM2878499 | OTHER | 767.0 MB |
| SRR6458685_GSM2878500 | OTHER | 719.0 MB |
| SRR6458686_GSM2878501 | OTHER | 866.0 MB |
| SRR6458687_GSM2878502 | OTHER | 693.0 MB |
| SRR6458688_GSM2878503 | OTHER | 687.0 MB |
| SRR6458689_GSM2878504 | OTHER | 518.0 MB |
| SRR6458690_GSM2878505 | OTHER | 698.0 MB |
| SRR6458691_GSM2878506 | OTHER | 1020.0 MB |
| SRR6458692_GSM2878507 | OTHER | 1.0 GB |
| SRR6458693_GSM2878508 | OTHER | 818.0 MB |
| SRR6458694_GSM2878509 | OTHER | 760.0 MB |
| SRR6458695_GSM2878510 | OTHER | 806.0 MB |
| SRR6458696_GSM2878511 | OTHER | 499.0 MB |
| SRR6458697_GSM2878512 | OTHER | 513.0 MB |
| SRR6458698_GSM2878513 | OTHER | 737.0 MB |
| SRR6458699_GSM2878514 | OTHER | 603.0 MB |
| SRR6458700_GSM2878515 | OTHER | 706.0 MB |
| SRR6458701_GSM2878516 | OTHER | 816.0 MB |
| SRR6458702_GSM2878517 | OTHER | 910.0 MB |
| SRR6458703_GSM2878518 | OTHER | 745.0 MB |
| SRR6458704_GSM2878519 | OTHER | 277.0 MB |
| SRR6458705_GSM2878520 | OTHER | 757.0 MB |
| SRR6458706_GSM2878521 | OTHER | 815.0 MB |
| SRR6458707_GSM2878522 | OTHER | 880.0 MB |
| SRR6458708_GSM2878523 | OTHER | 1.6 GB |
| SRR6458709_GSM2878524 | OTHER | 3.4 GB |
| SRR6458710_GSM2878525 | OTHER | 2.6 GB |
| SRR6458711_GSM2878526 | OTHER | 534.0 MB |
| SRR6458712_GSM2878527 | OTHER | 977.0 MB |
| SRR6458713_GSM2878528 | OTHER | 1.2 GB |
| SRR6458714_GSM2878529 | OTHER | 946.0 MB |
| SRR6458715_GSM2878530 | OTHER | 545.0 MB |
| SRR6458716_GSM2878531 | OTHER | 574.0 MB |
| SRR6458717_GSM2878532 | OTHER | 1.1 GB |
| SRR6458718_GSM2878533 | OTHER | 735.0 MB |
| SRR6458719_GSM2878534 | OTHER | 770.0 MB |
| SRR6458720_GSM2878535 | OTHER | 708.0 MB |
| SRR6458721_GSM2878536 | OTHER | 1.1 GB |
| SRR6458722_GSM2878537 | OTHER | 882.0 MB |
| SRR6458723_GSM2878538 | OTHER | 1.1 GB |
| SRR6458724_GSM2878539 | OTHER | 1.9 GB |
| SRR6458725_GSM2878540 | OTHER | 911.0 MB |
| SRR6458726_GSM2878541 | OTHER | 870.0 MB |
| SRR6458727_GSM2878542 | OTHER | 1.7 GB |
| SRR6458728_GSM2878543 | OTHER | 201.0 MB |
| SRR6458729_GSM2878544 | OTHER | 287.0 MB |
| SRR6458730_GSM2878545 | OTHER | 645.0 MB |
| SRR6458731_GSM2878546 | OTHER | 301.0 MB |
| SRR6458732_GSM2878547 | OTHER | 136.0 MB |
| SRR6458733_GSM2878548 | OTHER | 932.0 MB |
| SRR6458734_GSM2878549 | OTHER | 321.0 MB |
| SRR6458735_GSM2878550 | OTHER | 984.0 MB |
| SRR6458736_GSM2878551 | OTHER | 372.0 MB |
| SRR6458737_GSM2878552 | OTHER | 482.0 MB |
| SRR6458738_GSM2878553 | OTHER | 1.6 GB |
| SRR6458739_GSM2878554 | OTHER | 1.0 GB |
| SRR6458740_GSM2878555 | OTHER | 972.0 MB |
| SRR6458741_GSM2878556 | OTHER | 850.0 MB |
| SRR6458742_GSM2878557 | OTHER | 1.1 GB |
| SRR6458743_GSM2878558 | OTHER | 1.1 GB |
| SRR6458744_GSM2878559 | OTHER | 998.0 MB |
| SRR6458745_GSM2878560 | OTHER | 747.0 MB |
| SRR6458746_GSM2878561 | OTHER | 996.0 MB |
| SRR6458747_GSM2878562 | OTHER | 644.0 MB |
| SRR6458748_GSM2878563 | OTHER | 695.0 MB |
| SRR6458749_GSM2878564 | OTHER | 865.0 MB |
| SRR6458750_GSM2878565 | OTHER | 606.0 MB |
| SRR6458751_GSM2878566 | OTHER | 1.1 GB |
| SRR6458752_GSM2878567 | OTHER | 1.3 GB |
| SRR6458753_GSM2878568 | OTHER | 932.0 MB |
| SRR6458754_GSM2878569 | OTHER | 1.2 GB |
| SRR6458755_GSM2878570 | OTHER | 676.0 MB |
| SRR6458756_GSM2878571 | OTHER | 837.0 MB |
| SRR6458757_GSM2878572 | OTHER | 679.0 MB |
| SRR6458758_GSM2878573 | OTHER | 788.0 MB |
| SRR6458759_GSM2878574 | OTHER | 806.0 MB |
| SRR6458760_GSM2878575 | OTHER | 647.0 MB |
| SRR6458761_GSM2878576 | OTHER | 732.0 MB |
| SRR6458762 | OTHER | 647.5 MB |
| SRR6458762_GSM2878577 | OTHER | 647.0 MB |
| SRR6458763_GSM2878578 | OTHER | 712.0 MB |
| SRR7889842_GSM3398052 | OTHER | 385.0 MB |
| SRR7889843_GSM3398053 | OTHER | 352.0 MB |
| SRR7889844_GSM3398054 | OTHER | 487.0 MB |
| SRR7889845_GSM3398055 | OTHER | 479.0 MB |
| SRR7889846_GSM3398056 | OTHER | 475.0 MB |
| SRR7889847 | OTHER | 354.4 MB |
| SRR7889847_GSM3398057 | OTHER | 354.0 MB |
| SRR7889848_GSM3398058 | OTHER | 913.0 MB |
| SRR7889849_GSM3398059 | OTHER | 1.0 GB |
| SRR7889850_GSM3398060 | OTHER | 576.0 MB |
| SRR7889851_GSM3398061 | OTHER | 684.0 MB |
| SRR7889852_GSM3398062 | OTHER | 963.0 MB |
| SRR7889853_GSM3398063 | OTHER | 688.0 MB |
| SRR7889854_GSM3398064 | OTHER | 908.0 MB |
| SRR7889855_GSM3398065 | OTHER | 875.0 MB |
| SRR7889856_GSM3398066 | OTHER | 764.0 MB |
| SRR7889857_GSM3398067 | OTHER | 894.0 MB |
| SRR7889858_GSM3398068 | OTHER | 907.0 MB |
| SRR7889859_GSM3398069 | OTHER | 679.0 MB |
| SRR7889860_GSM3398070 | OTHER | 725.0 MB |
| SRR7889861_GSM3398071 | OTHER | 841.0 MB |
| SRR7889862_GSM3398072 | OTHER | 550.0 MB |
| SRR7889863_GSM3398073 | OTHER | 656.0 MB |
| SRR7889864_GSM3398074 | OTHER | 843.0 MB |
| SRR7889865_GSM3398075 | OTHER | 604.0 MB |
| SRR7889866_GSM3398076 | OTHER | 396.0 MB |
| SRR7889867_GSM3398077 | OTHER | 461.0 MB |
| SRR7889868_GSM3398078 | OTHER | 331.0 MB |
| SRR7889869_GSM3398079 | OTHER | 1.3 GB |
| SRR7889870_GSM3398080 | OTHER | 612.0 MB |
| SRR7889871_GSM3398081 | OTHER | 619.0 MB |
| SRR7889872_GSM3398082 | OTHER | 612.0 MB |
| SRR7889873_GSM3398083 | OTHER | 529.0 MB |
| SRR7889874_GSM3398084 | OTHER | 675.0 MB |
| SRR7889875 | OTHER | 1017.0 MB |
| SRR7889875_GSM3398085 | OTHER | 1017.0 MB |
| SRR7889876_GSM3398086 | OTHER | 852.0 MB |
| SRR7889877_GSM3398087 | OTHER | 933.0 MB |
| SRR7889878_GSM3398088 | OTHER | 798.0 MB |
| SRR7889879 | OTHER | 1.0 GB |
| SRR7889879_GSM3398089 | OTHER | 1.0 GB |
| SRR7889880_GSM3398090 | OTHER | 882.0 MB |
| SRR7889881_GSM3398091 | OTHER | 736.0 MB |
| SRR7889882_GSM3398092 | OTHER | 877.0 MB |
| SRR7889883_GSM3398093 | OTHER | 834.0 MB |
| SRR7889884_GSM3398094 | OTHER | 957.0 MB |
| SRR7889885_GSM3398095 | OTHER | 532.0 MB |
| SRR7889886_GSM3398096 | OTHER | 760.0 MB |
Best practices for eCLIP experiments and analysis [poor quality]
Homo sapiens
457 data files
| File | Type | Size |
|---|---|---|
| 202_01.R1.fastq.gz | OTHER | 97.0 MB |
| 202_02.R1.fastq.gz | OTHER | 360.5 MB |
| 214_01.R1.fastq.gz | OTHER | 300.1 MB |
| 214_INPUT_GAATTCGT-ATAGAGGC_L003_R1.unassigned.barcoded.fas… | OTHER | 584.6 MB |
| 219_01.R1.fastq.gz | OTHER | 372.7 MB |
| 219_02.R1.fastq.gz | OTHER | 212.9 MB |
| 219_INPUT_GAATTCGT-AGGCGAAG_L003_R1.unassigned.barcoded.fas… | OTHER | 436.6 MB |
| 225_01.R1.fastq.gz | OTHER | 145.0 MB |
| 225_02.R1.fastq.gz | OTHER | 36.0 MB |
| 225_INPUT_TCCGGAGA-TAATCTTA_L001_R1.unassigned.barcoded.fas… | OTHER | 386.5 MB |
| 232_01.R1.fastq.gz | OTHER | 367.4 MB |
| 232_02.R1.fastq.gz | OTHER | 301.5 MB |
| 232_INPUT_GAATTCGT-AGGCGAAG_L002_R1.unassigned.barcoded.fas… | OTHER | 501.5 MB |
| 234_01.R1.fastq.gz | OTHER | 381.4 MB |
| 246_01.R1.fastq.gz | OTHER | 444.2 MB |
| 246_02.R1.fastq.gz | OTHER | 452.3 MB |
| 246_INPUT_GAGATTCC-GGCTCTGA_L003_R1.unassigned.barcoded.fas… | OTHER | 777.9 MB |
| 254_01.R1.fastq.gz | OTHER | 356.9 MB |
| 254_02.R1.fastq.gz | OTHER | 339.6 MB |
| 254_INPUT_GAGATTCC-TAATCTTA_L006_R1.unassigned.barcoded.fas… | OTHER | 510.2 MB |
| 255_01.R1.fastq.gz | OTHER | 549.4 MB |
| 255_02.R1.fastq.gz | OTHER | 443.0 MB |
| 255_INPUT_ATTACTCG-TATAGCCT_L004_R1.unassigned.barcoded.fas… | OTHER | 728.4 MB |
| 280_01.R1.fastq.gz | OTHER | 447.1 MB |
| 280_02.R1.fastq.gz | OTHER | 501.8 MB |
| 280_INPUT_ATTACTCG-TATAGCCT_L001_R1.unassigned.barcoded.fas… | OTHER | 634.1 MB |
| 290_01.R1.fastq.gz | OTHER | 586.3 MB |
| 290_02.R1.fastq.gz | OTHER | 869.8 MB |
| 290_INPUT_ATTACTCG-TATAGCCT_L001_R1.unassigned.barcoded.fas… | OTHER | 914.9 MB |
| 300_01.R1.fastq.gz | OTHER | 463.7 MB |
| 300_02.R1.fastq.gz | OTHER | 400.1 MB |
| 300_INPUT_CGCTCATT-TAATCTTA_L001_R1.unassigned.barcoded.fas… | OTHER | 819.9 MB |
| 317_01.R1.fastq.gz | OTHER | 352.3 MB |
| 317_02.R1.fastq.gz | OTHER | 284.4 MB |
| 317_INPUT_GAGATTCC-ATAGAGGC_L002_R1.unassigned.barcoded.fas… | OTHER | 678.6 MB |
| 323_01_4000.R1.fastq.gz | OTHER | 805.4 MB |
| 323_02_4000.R1.fastq.gz | OTHER | 832.8 MB |
| 323_INPUT_TCCGGAGA-ATAGAGGC_L001_R1.unassigned.barcoded.fas… | OTHER | 593.9 MB |
| 327_01.R1.fastq.gz | OTHER | 299.6 MB |
| 327_02.R1.fastq.gz | OTHER | 323.3 MB |
| 327_INPUT_TCCGGAGA-TATAGCCT_L001_R1.unassigned.barcoded.fas… | OTHER | 492.0 MB |
| 328_01.R1.fastq.gz | OTHER | 295.0 MB |
| 328_02.R1.fastq.gz | OTHER | 312.3 MB |
| 328_INPUT_GAGATTCC-TATAGCCT_L002_R1.unassigned.barcoded.fas… | OTHER | 697.2 MB |
| 333_01_4000.R1.fastq.gz | OTHER | 1.2 GB |
| 333_02_4000.R1.fastq.gz | OTHER | 806.7 MB |
| 333_INPUT_CGCTCATT-CCTATCCT_L001_R1.unassigned.barcoded.fas… | OTHER | 926.1 MB |
| 351_01.R1.fastq.gz | OTHER | 348.5 MB |
| 351_02.R1.fastq.gz | OTHER | 191.6 MB |
| 351_INPUT_S8_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 838.2 MB |
| 356_01.R1.fastq.gz | OTHER | 337.0 MB |
| 356_02.R1.fastq.gz | OTHER | 294.3 MB |
| 356_INPUT_TCCGGAGA-GGCTCTGA_L001_R1.unassigned.barcoded.fas… | OTHER | 593.5 MB |
| 363_01_4000.R1.fastq.gz | OTHER | 1.2 GB |
| 363_02_4000.R1.fastq.gz | OTHER | 1.5 GB |
| 363_INPUT_4000_S18_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1006.1 MB |
| 386_01_4000.R1.fastq.gz | OTHER | 1.4 GB |
| 386_02_4000.R1.fastq.gz | OTHER | 1.5 GB |
| 386_INPUT_4000_S19_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 780.5 MB |
| 396_01.R1.fastq.gz | OTHER | 668.1 MB |
| 396_02.R1.fastq.gz | OTHER | 669.6 MB |
| 396_INPUT_ATTACTCG-CCTATCCT_L004_R1.unassigned.barcoded.fas… | OTHER | 1.3 GB |
| 397_01.R1.fastq.gz | OTHER | 840.6 MB |
| 397_02.R1.fastq.gz | OTHER | 1.1 GB |
| 397_INPUT_ATTACTCG-AGGCGAAG_L006_R1.unassigned.barcoded.fas… | OTHER | 401.2 MB |
| 403_01_4000.R1.fastq.gz | OTHER | 924.3 MB |
| 403_02_4000.R1.fastq.gz | OTHER | 1.2 GB |
| 403_INPUT_4000_S80_L006_R1_001.unassigned.barcoded.fastq.gz | OTHER | 516.8 MB |
| 407_01.R1.fastq.gz | OTHER | 922.8 MB |
| 407_02.R1.fastq.gz | OTHER | 713.2 MB |
| 407_INPUT_S5_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.1 GB |
| 429_01.R1.fastq.gz | OTHER | 359.0 MB |
| 429_02.R1.fastq.gz | OTHER | 200.1 MB |
| 429_INPUT_GAATTCGT-ATAGAGGC_L004_R1.unassigned.barcoded.fas… | OTHER | 1015.2 MB |
| 430_01.R1.fastq.gz | OTHER | 633.8 MB |
| 430_02.R1.fastq.gz | OTHER | 648.3 MB |
| 430_INPUT_S16_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 901.9 MB |
| 467_01.R1.fastq.gz | OTHER | 635.0 MB |
| 467_02.R1.fastq.gz | OTHER | 752.6 MB |
| 467_INPUT_S18_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 853.1 MB |
| 472_01.R1.fastq.gz | OTHER | 669.5 MB |
| 472_02.R1.fastq.gz | OTHER | 190.2 MB |
| 472_INPUT_S12_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 921.5 MB |
| 474_01.R1.fastq.gz | OTHER | 635.6 MB |
| 474_02.R1.fastq.gz | OTHER | 856.6 MB |
| 474_INPUT_S43_L004_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.1 GB |
| 479_01.R1.fastq.gz | OTHER | 506.5 MB |
| 479_02.R1.fastq.gz | OTHER | 735.5 MB |
| 479_INPUT_S20_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 688.0 MB |
| 486_01_4000.R1.fastq.gz | OTHER | 2.0 GB |
| 486_02_4000.R1.fastq.gz | OTHER | 2.2 GB |
| 486_INPUT_S44_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.2 GB |
| 500_01.R1.fastq.gz | OTHER | 773.8 MB |
| 500_02.R1.fastq.gz | OTHER | 730.7 MB |
| 500_INPUT_S4_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 884.5 MB |
| 528_01.R1.fastq.gz | OTHER | 119.8 MB |
| 528_02.R1.fastq.gz | OTHER | 127.3 MB |
| 528_INPUT_S14_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 215.7 MB |
| 542_01.R1.fastq.gz | OTHER | 895.9 MB |
| 542_02.R1.fastq.gz | OTHER | 901.9 MB |
| 542_INPUT_S33_L004_R1_001.unassigned.barcoded.fastq.gz | OTHER | 817.7 MB |
| 554_01.R1.fastq.gz | OTHER | 566.1 MB |
| 554_02.R1.fastq.gz | OTHER | 627.9 MB |
| 554_INPUT_S59_L007_R1_001.unassigned.barcoded.fastq.gz | OTHER | 841.8 MB |
| 557_01.R1.fastq.gz | OTHER | 992.1 MB |
| 557_02.R1.fastq.gz | OTHER | 308.2 MB |
| 557_INPUT_S45_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.2 GB |
| 573_01.R1.fastq.gz | OTHER | 231.1 MB |
| 573_02.R1.fastq.gz | OTHER | 1.5 GB |
| 573_INPUT_S50_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 283.0 MB |
| 579_01.R1.fastq.gz | OTHER | 888.9 MB |
| 579_02.R1.fastq.gz | OTHER | 973.2 MB |
| 579_INPUT_S50_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 869.3 MB |
| 580_01.R1.fastq.gz | OTHER | 617.9 MB |
| 580_02.R1.fastq.gz | OTHER | 458.7 MB |
| 580_INPUT_S12_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 454.6 MB |
| 590_01.R1.fastq.gz | OTHER | 1003.3 MB |
| 590_02.R1.fastq.gz | OTHER | 643.2 MB |
| 590_INPUT_S8_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 776.6 MB |
| 591_01.R1.fastq.gz | OTHER | 894.2 MB |
| 591_02.R1.fastq.gz | OTHER | 540.0 MB |
| 591_INPUT_S14_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 674.1 MB |
| 594_01.R1.fastq.gz | OTHER | 858.5 MB |
| 594_02.R1.fastq.gz | OTHER | 533.7 MB |
| 594_INPUT_S24_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 689.4 MB |
| 597_01.R1.fastq.gz | OTHER | 209.2 MB |
| 597_02.R1.fastq.gz | OTHER | 330.0 MB |
| 597_INPUT_S6_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 602.7 MB |
| 599_01.R1.fastq.gz | OTHER | 248.3 MB |
| 599_02.R1.fastq.gz | OTHER | 301.1 MB |
| 599_INPUT_S8_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 493.5 MB |
| 618_01.R1.fastq.gz | OTHER | 1.2 GB |
| 618_02.R1.fastq.gz | OTHER | 964.0 MB |
| 618_INPUT_S48_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.1 GB |
| 622_01.R1.fastq.gz | OTHER | 436.9 MB |
| 622_02.R1.fastq.gz | OTHER | 564.9 MB |
| 622_INPUT_S28_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 571.1 MB |
| 627_01.R1.fastq.gz | OTHER | 515.4 MB |
| 627_02.R1.fastq.gz | OTHER | 572.7 MB |
| 627_INPUT_S10_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 918.3 MB |
| 630_01.R1.fastq.gz | OTHER | 691.3 MB |
| 630_02.R1.fastq.gz | OTHER | 604.1 MB |
| 630_02.R2.fastq.gz | OTHER | 604.1 MB |
| 630_INPUT_S24_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.2 GB |
| 634_01.R1.fastq.gz | OTHER | 183.0 MB |
| 634_02.R1.fastq.gz | OTHER | 164.4 MB |
| 634_INPUT_S4_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 562.5 MB |
| 635_01.R1.fastq.gz | OTHER | 264.3 MB |
| 635_02.R1.fastq.gz | OTHER | 359.8 MB |
| 635_INPUT_S6_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 633.9 MB |
| 636_01.R1.fastq.gz | OTHER | 212.7 MB |
| 636_02.R1.fastq.gz | OTHER | 265.5 MB |
| 636_INPUT_S10_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 769.6 MB |
| 637_01.R1.fastq.gz | OTHER | 877.8 MB |
| 637_02.R1.fastq.gz | OTHER | 698.2 MB |
| 637_INPUT_S109_L008_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1017.1 MB |
| 648_01.R1.fastq.gz | OTHER | 487.9 MB |
| 648_02.R1.fastq.gz | OTHER | 30.6 MB |
| 648_INPUT_S8_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 588.5 MB |
| 657_01.R1.fastq.gz | OTHER | 351.1 MB |
| 657_02.R1.fastq.gz | OTHER | 675.1 MB |
| 657_INPUT_S29_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.0 GB |
| 666_01.R1.fastq.gz | OTHER | 443.5 MB |
| 666_02.R1.fastq.gz | OTHER | 589.1 MB |
| 666_INPUT_S41_L004_R1_001.unassigned.barcoded.fastq.gz | OTHER | 4.8 GB |
| 671_01.R1.fastq.gz | OTHER | 249.5 MB |
| 671_02.R1.fastq.gz | OTHER | 227.8 MB |
| 671_INPUT_S8_L001_R1_001.unassigned.barcoded.fastq.gz | OTHER | 377.1 MB |
| 673_01.R1.fastq.gz | OTHER | 310.5 MB |
| 673_02.R1.fastq.gz | OTHER | 856.1 MB |
| 673_INPUT_S37_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.2 GB |
| 687_01.R1.fastq.gz | OTHER | 631.2 MB |
| 687_02.R1.fastq.gz | OTHER | 1020.4 MB |
| 687_INPUT_S16_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 811.6 MB |
| 688_01.R1.fastq.gz | OTHER | 900.5 MB |
| 688_02.R1.fastq.gz | OTHER | 1.2 GB |
| 688_INPUT_S18_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 887.0 MB |
| 691_01.R1.fastq.gz | OTHER | 553.2 MB |
| 691_02.R1.fastq.gz | OTHER | 347.9 MB |
| 691_INPUT_S35_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 468.4 MB |
| 701_01.R1.fastq.gz | OTHER | 284.4 MB |
| 701_02.R1.fastq.gz | OTHER | 810.9 MB |
| 701_INPUT_S5_L003_R1_001.unassigned.barcoded.fastq.gz | OTHER | 882.8 MB |
| 704_01.R1.fastq.gz | OTHER | 1.0 GB |
| 704_02.R1.fastq.gz | OTHER | 935.1 MB |
| 704_INPUT_S85_L008_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.3 GB |
| 710_01.R1.fastq.gz | OTHER | 579.5 MB |
| 710_02.R1.fastq.gz | OTHER | 603.5 MB |
| 710_INPUT_S53_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1018.7 MB |
| 715_01.R1.fastq.gz | OTHER | 950.0 MB |
| 715_02.R1.fastq.gz | OTHER | 562.3 MB |
| 715_INPUT_S69_L007_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.0 GB |
| 718_01.R1.fastq.gz | OTHER | 773.6 MB |
| 718_02.R1.fastq.gz | OTHER | 939.3 MB |
| 718_INPUT_S71_L007_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1004.0 MB |
| 720_01.R1.fastq.gz | OTHER | 717.7 MB |
| 720_02.R1.fastq.gz | OTHER | 741.5 MB |
| 720_INPUT_S75_L007_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.1 GB |
| 725_01.R1.fastq.gz | OTHER | 520.0 MB |
| 725_02.R1.fastq.gz | OTHER | 525.8 MB |
| 725_INPUT_S16_L002_R1_001.unassigned.barcoded.fastq.gz | OTHER | 319.1 MB |
| 727_01.R1.fastq.gz | OTHER | 750.1 MB |
| 727_02.R1.fastq.gz | OTHER | 452.3 MB |
| 727_INPUT_S63_L006_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1010.0 MB |
| 728_01.R1.fastq.gz | OTHER | 1.2 GB |
| 728_02.R1.fastq.gz | OTHER | 1.1 GB |
| 728_INPUT_S61_L006_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.1 GB |
| 749_01.R1.fastq.gz | OTHER | 762.0 MB |
| 749_02.R1.fastq.gz | OTHER | 722.2 MB |
| 749_INPUT_S89_L008_R1_001.unassigned.barcoded.fastq.gz | OTHER | 822.3 MB |
| 751_01.R1.fastq.gz | OTHER | 500.3 MB |
| 751_02.R1.fastq.gz | OTHER | 560.2 MB |
| 751_INPUT_S36_L004_R1_001.unassigned.barcoded.fastq.gz | OTHER | 776.0 MB |
| 756_01.R1.fastq.gz | OTHER | 743.7 MB |
| 756_02.R1.fastq.gz | OTHER | 811.4 MB |
| 756_INPUT_S48_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 761.7 MB |
| 757_01.R1.fastq.gz | OTHER | 746.5 MB |
| 757_02.R1.fastq.gz | OTHER | 763.6 MB |
| 757_INPUT_S50_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 818.0 MB |
| 758_01.R1.fastq.gz | OTHER | 952.4 MB |
| 758_02.R1.fastq.gz | OTHER | 761.8 MB |
| 758_INPUT_S52_L005_R1_001.unassigned.barcoded.fastq.gz | OTHER | 832.4 MB |
| 759_01.R1.fastq.gz | OTHER | 731.6 MB |
| 759_02.R1.fastq.gz | OTHER | 1.2 GB |
| 759_INPUT_S118_L008_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.1 GB |
| 760_01.R1.fastq.gz | OTHER | 652.7 MB |
| 760_02.R1.fastq.gz | OTHER | 458.8 MB |
| 760_INPUT_S114_L008_R1_001.unassigned.barcoded.fastq.gz | OTHER | 1.1 GB |
| PTBP1-202-INPUT_S6_R1.unassigned.barcoded.fastq.gz | OTHER | 491.3 MB |
| SRR6458764_GSM2878579 | OTHER | 145.0 MB |
| SRR6458765_GSM2878580 | OTHER | 36.0 MB |
| SRR6458766_GSM2878581 | OTHER | 367.0 MB |
| SRR6458767_GSM2878582 | OTHER | 301.0 MB |
| SRR6458768_GSM2878583 | OTHER | 372.0 MB |
| SRR6458769_GSM2878584 | OTHER | 212.0 MB |
| SRR6458770_GSM2878585 | OTHER | 381.0 MB |
| SRR6458771_GSM2878586 | OTHER | 300.0 MB |
| SRR6458772_GSM2878587 | OTHER | 96.0 MB |
| SRR6458773_GSM2878588 | OTHER | 360.0 MB |
| SRR6458774_GSM2878589 | OTHER | 442.0 MB |
| SRR6458775_GSM2878590 | OTHER | 549.0 MB |
| SRR6458776_GSM2878591 | OTHER | 356.0 MB |
| SRR6458777_GSM2878592 | OTHER | 339.0 MB |
| SRR6458778_GSM2878593 | OTHER | 352.0 MB |
| SRR6458779_GSM2878594 | OTHER | 284.0 MB |
| SRR6458780_GSM2878595 | OTHER | 299.0 MB |
| SRR6458781_GSM2878596 | OTHER | 323.0 MB |
| SRR6458782_GSM2878597 | OTHER | 295.0 MB |
| SRR6458783_GSM2878598 | OTHER | 312.0 MB |
| SRR6458784_GSM2878599 | OTHER | 336.0 MB |
| SRR6458785_GSM2878600 | OTHER | 294.0 MB |
| SRR6458786_GSM2878601 | OTHER | 586.0 MB |
| SRR6458787_GSM2878602 | OTHER | 869.0 MB |
| SRR6458788_GSM2878603 | OTHER | 463.0 MB |
| SRR6458789_GSM2878604 | OTHER | 400.0 MB |
| SRR6458790_GSM2878605 | OTHER | 840.0 MB |
| SRR6458791_GSM2878606 | OTHER | 1.1 GB |
| SRR6458792_GSM2878607 | OTHER | 668.0 MB |
| SRR6458793_GSM2878608 | OTHER | 669.0 MB |
| SRR6458794_GSM2878609 | OTHER | 358.0 MB |
| SRR6458795_GSM2878610 | OTHER | 200.0 MB |
| SRR6458796_GSM2878611 | OTHER | 922.0 MB |
| SRR6458797_GSM2878612 | OTHER | 713.0 MB |
| SRR6458798_GSM2878613 | OTHER | 348.0 MB |
| SRR6458799_GSM2878614 | OTHER | 191.0 MB |
| SRR6458800_GSM2878615 | OTHER | 633.0 MB |
| SRR6458801_GSM2878616 | OTHER | 648.0 MB |
| SRR6458802_GSM2878617 | OTHER | 634.0 MB |
| SRR6458803_GSM2878618 | OTHER | 752.0 MB |
| SRR6458804_GSM2878619 | OTHER | 506.0 MB |
| SRR6458805_GSM2878620 | OTHER | 735.0 MB |
| SRR6458806_GSM2878621 | OTHER | 895.0 MB |
| SRR6458807_GSM2878622 | OTHER | 901.0 MB |
| SRR6458808_GSM2878623 | OTHER | 566.0 MB |
| SRR6458809_GSM2878624 | OTHER | 627.0 MB |
| SRR6458810_GSM2878625 | OTHER | 992.0 MB |
| SRR6458811_GSM2878626 | OTHER | 308.0 MB |
| SRR6458812_GSM2878627 | OTHER | 805.0 MB |
| SRR6458813_GSM2878628 | OTHER | 832.0 MB |
| SRR6458814_GSM2878629 | OTHER | 1.2 GB |
| SRR6458815_GSM2878630 | OTHER | 806.0 MB |
| SRR6458816_GSM2878631 | OTHER | 617.0 MB |
| SRR6458817_GSM2878632 | OTHER | 458.0 MB |
| SRR6458818_GSM2878633 | OTHER | 1003.0 MB |
| SRR6458819_GSM2878634 | OTHER | 643.0 MB |
| SRR6458820_GSM2878635 | OTHER | 894.0 MB |
| SRR6458821_GSM2878636 | OTHER | 539.0 MB |
| SRR6458822_GSM2878637 | OTHER | 858.0 MB |
| SRR6458823_GSM2878638 | OTHER | 533.0 MB |
| SRR6458824_GSM2878639 | OTHER | 436.0 MB |
| SRR6458825_GSM2878640 | OTHER | 564.0 MB |
| SRR6458826_GSM2878641 | OTHER | 515.0 MB |
| SRR6458827_GSM2878642 | OTHER | 572.0 MB |
| SRR6458828_GSM2878643 | OTHER | 773.0 MB |
| SRR6458829_GSM2878644 | OTHER | 730.0 MB |
| SRR6458830_GSM2878645 | OTHER | 888.0 MB |
| SRR6458831_GSM2878646 | OTHER | 973.0 MB |
| SRR6458832_GSM2878647 | OTHER | 1.2 GB |
| SRR6458833_GSM2878648 | OTHER | 963.0 MB |
| SRR6458834_GSM2878649 | OTHER | 691.0 MB |
| SRR6458835_GSM2878650 | OTHER | 604.0 MB |
| SRR6458836_GSM2878651 | OTHER | 1.2 GB |
| SRR6458837_GSM2878652 | OTHER | 1.5 GB |
| SRR6458838_GSM2878653 | OTHER | 1.4 GB |
| SRR6458839_GSM2878654 | OTHER | 1.5 GB |
| SRR6458840_GSM2878655 | OTHER | 2.0 GB |
| SRR6458841_GSM2878656 | OTHER | 2.2 GB |
| SRR6458842_GSM2878657 | OTHER | 924.0 MB |
| SRR6458843_GSM2878658 | OTHER | 1.2 GB |
| SRR6458844_GSM2878659 | OTHER | 877.0 MB |
| SRR6458845_GSM2878660 | OTHER | 698.0 MB |
| SRR6458846_GSM2878661 | OTHER | 669.0 MB |
| SRR6458847_GSM2878662 | OTHER | 190.0 MB |
| SRR6458848_GSM2878663 | OTHER | 635.0 MB |
| SRR6458849_GSM2878664 | OTHER | 856.0 MB |
| SRR6458850_GSM2878665 | OTHER | 231.0 MB |
| SRR6458851_GSM2878666 | OTHER | 1.5 GB |
| SRR6458852_GSM2878667 | OTHER | 351.0 MB |
| SRR6458853_GSM2878668 | OTHER | 675.0 MB |
| SRR6458854_GSM2878669 | OTHER | 310.0 MB |
| SRR6458855_GSM2878670 | OTHER | 856.0 MB |
| SRR6458856_GSM2878671 | OTHER | 553.0 MB |
| SRR6458857_GSM2878672 | OTHER | 347.0 MB |
| SRR6458858_GSM2878673 | OTHER | 209.0 MB |
| SRR6458859_GSM2878674 | OTHER | 330.0 MB |
| SRR6458860_GSM2878675 | OTHER | 248.0 MB |
| SRR6458861_GSM2878676 | OTHER | 301.0 MB |
| SRR6458862_GSM2878677 | OTHER | 183.0 MB |
| SRR6458863_GSM2878678 | OTHER | 164.0 MB |
| SRR6458864_GSM2878679 | OTHER | 264.0 MB |
| SRR6458865_GSM2878680 | OTHER | 359.0 MB |
| SRR6458866_GSM2878681 | OTHER | 212.0 MB |
| SRR6458867_GSM2878682 | OTHER | 265.0 MB |
| SRR6458868_GSM2878683 | OTHER | 1.0 GB |
| SRR6458869_GSM2878684 | OTHER | 935.0 MB |
| SRR6458870_GSM2878685 | OTHER | 950.0 MB |
| SRR6458871_GSM2878686 | OTHER | 562.0 MB |
| SRR6458872_GSM2878687 | OTHER | 773.0 MB |
| SRR6458873_GSM2878688 | OTHER | 939.0 MB |
| SRR6458874_GSM2878689 | OTHER | 717.0 MB |
| SRR6458875_GSM2878690 | OTHER | 741.0 MB |
| SRR6458876_GSM2878691 | OTHER | 119.0 MB |
| SRR6458877_GSM2878692 | OTHER | 127.0 MB |
| SRR6458878_GSM2878693 | OTHER | 443.0 MB |
| SRR6458879_GSM2878694 | OTHER | 589.0 MB |
| SRR6458880_GSM2878695 | OTHER | 249.0 MB |
| SRR6458881_GSM2878696 | OTHER | 227.0 MB |
| SRR6458882_GSM2878697 | OTHER | 631.0 MB |
| SRR6458883_GSM2878698 | OTHER | 1020.0 MB |
| SRR6458884_GSM2878699 | OTHER | 900.0 MB |
| SRR6458885_GSM2878700 | OTHER | 1.2 GB |
| SRR6458886_GSM2878701 | OTHER | 284.0 MB |
| SRR6458887_GSM2878702 | OTHER | 810.0 MB |
| SRR6458888_GSM2878703 | OTHER | 579.0 MB |
| SRR6458889_GSM2878704 | OTHER | 603.0 MB |
| SRR6458890_GSM2878705 | OTHER | 750.0 MB |
| SRR6458891_GSM2878706 | OTHER | 452.0 MB |
| SRR6458892_GSM2878707 | OTHER | 1.2 GB |
| SRR6458893_GSM2878708 | OTHER | 1.1 GB |
| SRR6458894_GSM2878709 | OTHER | 762.0 MB |
| SRR6458895_GSM2878710 | OTHER | 722.0 MB |
| SRR6458898_GSM2878713 | OTHER | 520.0 MB |
| SRR6458899_GSM2878714 | OTHER | 525.0 MB |
| SRR6458900_GSM2878715 | OTHER | 500.0 MB |
| SRR6458901_GSM2878716 | OTHER | 560.0 MB |
| SRR6458902_GSM2878717 | OTHER | 743.0 MB |
| SRR6458903_GSM2878718 | OTHER | 811.0 MB |
| SRR6458904_GSM2878719 | OTHER | 746.0 MB |
| SRR6458905_GSM2878720 | OTHER | 763.0 MB |
| SRR6458906_GSM2878721 | OTHER | 952.0 MB |
| SRR6458907_GSM2878722 | OTHER | 761.0 MB |
| SRR6458908_GSM2878723 | OTHER | 731.0 MB |
| SRR6458909_GSM2878724 | OTHER | 1.2 GB |
| SRR6458910_GSM2878725 | OTHER | 652.0 MB |
| SRR6458911_GSM2878726 | OTHER | 458.0 MB |
| SRR6458912_GSM2878727 | OTHER | 487.0 MB |
| SRR6458913_GSM2878728 | OTHER | 30.0 MB |
| SRR6458914_GSM2878729 | OTHER | 491.0 MB |
| SRR6458915_GSM2878730 | OTHER | 584.0 MB |
| SRR6458916_GSM2878731 | OTHER | 436.0 MB |
| SRR6458917_GSM2878732 | OTHER | 386.0 MB |
| SRR6458918_GSM2878733 | OTHER | 501.0 MB |
| SRR6458919_GSM2878734 | OTHER | 510.0 MB |
| SRR6458920_GSM2878735 | OTHER | 728.0 MB |
| SRR6458921_GSM2878736 | OTHER | 914.0 MB |
| SRR6458922_GSM2878737 | OTHER | 819.0 MB |
| SRR6458923_GSM2878738 | OTHER | 678.0 MB |
| SRR6458924_GSM2878739 | OTHER | 593.0 MB |
| SRR6458925_GSM2878740 | OTHER | 491.0 MB |
| SRR6458926_GSM2878741 | OTHER | 697.0 MB |
| SRR6458927_GSM2878742 | OTHER | 926.0 MB |
| SRR6458928_GSM2878743 | OTHER | 838.0 MB |
| SRR6458929_GSM2878744 | OTHER | 593.0 MB |
| SRR6458930_GSM2878745 | OTHER | 1006.0 MB |
| SRR6458931_GSM2878746 | OTHER | 780.0 MB |
| SRR6458932_GSM2878747 | OTHER | 1.3 GB |
| SRR6458933_GSM2878748 | OTHER | 401.0 MB |
| SRR6458934_GSM2878749 | OTHER | 516.0 MB |
| SRR6458935_GSM2878750 | OTHER | 1.1 GB |
| SRR6458936_GSM2878751 | OTHER | 1015.0 MB |
| SRR6458937_GSM2878752 | OTHER | 901.0 MB |
| SRR6458938_GSM2878753 | OTHER | 853.0 MB |
| SRR6458939_GSM2878754 | OTHER | 921.0 MB |
| SRR6458940_GSM2878755 | OTHER | 1.1 GB |
| SRR6458941_GSM2878756 | OTHER | 687.0 MB |
| SRR6458942_GSM2878757 | OTHER | 1.2 GB |
| SRR6458943_GSM2878758 | OTHER | 884.0 MB |
| SRR6458944_GSM2878759 | OTHER | 215.0 MB |
| SRR6458945_GSM2878760 | OTHER | 817.0 MB |
| SRR6458946_GSM2878761 | OTHER | 841.0 MB |
| SRR6458947_GSM2878762 | OTHER | 1.2 GB |
| SRR6458948_GSM2878763 | OTHER | 283.0 MB |
| SRR6458949_GSM2878764 | OTHER | 869.0 MB |
| SRR6458950_GSM2878765 | OTHER | 454.0 MB |
| SRR6458951_GSM2878766 | OTHER | 776.0 MB |
| SRR6458952_GSM2878767 | OTHER | 674.0 MB |
| SRR6458953_GSM2878768 | OTHER | 689.0 MB |
| SRR6458954_GSM2878769 | OTHER | 602.0 MB |
| SRR6458955_GSM2878770 | OTHER | 493.0 MB |
| SRR6458956_GSM2878771 | OTHER | 1.1 GB |
| SRR6458957_GSM2878772 | OTHER | 571.0 MB |
| SRR6458958_GSM2878773 | OTHER | 918.0 MB |
| SRR6458959_GSM2878774 | OTHER | 1.2 GB |
| SRR6458960_GSM2878775 | OTHER | 562.0 MB |
| SRR6458961_GSM2878776 | OTHER | 633.0 MB |
| SRR6458962_GSM2878777 | OTHER | 769.0 MB |
| SRR6458963_GSM2878778 | OTHER | 1017.0 MB |
| SRR6458964_GSM2878779 | OTHER | 588.0 MB |
| SRR6458965_GSM2878780 | OTHER | 1.0 GB |
| SRR6458966_GSM2878781 | OTHER | 4.8 GB |
| SRR6458967_GSM2878782 | OTHER | 377.0 MB |
| SRR6458968_GSM2878783 | OTHER | 1.2 GB |
| SRR6458970_GSM2878785 | OTHER | 811.0 MB |
| SRR6458971_GSM2878786 | OTHER | 887.0 MB |
| SRR6458972_GSM2878787 | OTHER | 468.0 MB |
| SRR6458973_GSM2878788 | OTHER | 882.0 MB |
| SRR6458974_GSM2878789 | OTHER | 1.3 GB |
| SRR6458975_GSM2878790 | OTHER | 1018.0 MB |
| SRR6458976_GSM2878791 | OTHER | 1.0 GB |
| SRR6458977_GSM2878792 | OTHER | 1003.0 MB |
| SRR6458978_GSM2878793 | OTHER | 1.1 GB |
| SRR6458979_GSM2878794 | OTHER | 319.0 MB |
| SRR6458980_GSM2878795 | OTHER | 1009.0 MB |
| SRR6458981_GSM2878796 | OTHER | 1.1 GB |
| SRR6458982_GSM2878797 | OTHER | 822.0 MB |
| SRR6458983_GSM2878798 | OTHER | 775.0 MB |
| SRR6458984_GSM2878799 | OTHER | 761.0 MB |
| SRR6458985_GSM2878800 | OTHER | 818.0 MB |
| SRR6458986_GSM2878801 | OTHER | 832.0 MB |
| SRR6458987_GSM2878802 | OTHER | 1.1 GB |
| SRR6458988_GSM2878803 | OTHER | 1.1 GB |
| SRR7883042_GSM3396755 | OTHER | 447.0 MB |
| SRR7883043_GSM3396756 | OTHER | 501.0 MB |
| SRR7883044_GSM3396757 | OTHER | 444.0 MB |
| SRR7883045_GSM3396758 | OTHER | 452.0 MB |
| SRR7883046_GSM3396759 | OTHER | 777.0 MB |
| SRR7883047_GSM3396760 | OTHER | 634.0 MB |
Potentially related datasets 6
These accessions were text-mined from the PMC full text. They may be referenced for comparison, cited from other studies, or otherwise mentioned without being primary data for this paper.
| Accession | Source | Title |
|---|---|---|
| GSM2878554 | GSM · GEO | No title in the index |
| GSM2878485 | GSM · GEO | No title in the index |
| GSM2878484 | GSM · GEO | No title in the index |
| ENCSR819XBT | ENCSR · ENCODE | eCLIP experiment on K562 against AATF |
| PXD011055 | PXD · PRIDE | No title in the index |
| GSE107766 | GSE · GEO GEO ↗ | Best practices for eCLIP experiments and analysis [uncertain quality] |
Analysis pipelines 3
| Pipeline | Assay | Steps | Dataset |
|---|---|---|---|
| GSE107766 eCLIP Data Processing geo_data_processing | eCLIP | 33 | GSE107766 |
| GSE107767 eCLIP Data Processing geo_data_processing | eCLIP | 33 | GSE107767 |
| GSE107768 eCLIP Data Processing geo_data_processing | eCLIP | 33 | GSE107768 |
Funding 4 grants
| Grant | Funder |
|---|---|
| R00 HG009530 | NHGRI NIH HHS (United States) |
| K99 HG009530 | NHGRI NIH HHS (United States) |
| U54 HG007005 | NHGRI NIH HHS (United States) |
| R01 NS075449 | NINDS NIH HHS (United States) |