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ENCSR584TCR

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eCLIP experiment on K562 against TDP43

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR924OLO

Summary

eCLIP of TARDBP in Homo sapiens K562

Analysis

View Data Processing
Analysis page is available for ENCSR584TCR.

ENCODE Metadata

Total file size: 1.8 GB
Assay: eCLIP
Target: TARDBP
Biosample: Homo sapiens K562
Files: 36
Unique ENC file IDs: 36
File Formats
bed (10) bigBed (10) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (20) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (3)

Transcriptome-pathology correlation identifies interplay between TDP-43 and the expression of its kinase CK1E in sporadic ALS.
Acta neuropathologica · 2018
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (36)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF524PYO ENCFF524PYO.bam bam (alignments); assembly: GRCh38 alignments GRCh38 249.5 MB link
ENCFF923ZPC ENCFF923ZPC.bam bam (alignments); assembly: GRCh38 alignments GRCh38 189.0 MB link
ENCFF453YOD ENCFF453YOD.bam bam (alignments); assembly: hg19 alignments hg19 190.7 MB link
ENCFF565CEU ENCFF565CEU.bam bam (alignments); assembly: hg19 alignments hg19 252.1 MB link
ENCFF037TVC ENCFF037TVC.bed bed (peaks); assembly: GRCh38 peaks GRCh38 148.7 KB link
ENCFF606RXB ENCFF606RXB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.2 MB link
ENCFF669TNM ENCFF669TNM.bed bed (peaks); assembly: GRCh38 peaks GRCh38 944.0 KB link
ENCFF781KGR ENCFF781KGR.bed bed (peaks); assembly: GRCh38 peaks GRCh38 310.1 KB link
ENCFF916MCG ENCFF916MCG.bed bed (peaks); assembly: GRCh38 peaks GRCh38 244.8 KB link
ENCFF259NLI ENCFF259NLI.bed bed (peaks); assembly: hg19 peaks hg19 145.3 KB link
ENCFF333KPU ENCFF333KPU.bed bed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF489VNW ENCFF489VNW.bed bed (peaks); assembly: hg19 peaks hg19 721.7 KB link
ENCFF697CMV ENCFF697CMV.bed bed (peaks); assembly: hg19 peaks hg19 938.8 KB link
ENCFF785PDJ ENCFF785PDJ.bed bed (peaks); assembly: hg19 peaks hg19 574.0 KB link
ENCFF022DCK ENCFF022DCK.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.6 MB link
ENCFF118WWO ENCFF118WWO.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.1 MB link
ENCFF195CIQ ENCFF195CIQ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 715.0 KB link
ENCFF653KZU ENCFF653KZU.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 484.8 KB link
ENCFF392HLM ENCFF392HLM.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.1 MB link
ENCFF393WWU ENCFF393WWU.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.6 MB link
ENCFF674IET ENCFF674IET.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.3 MB link
ENCFF706TWA ENCFF706TWA.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.4 MB link
ENCFF728SNB ENCFF728SNB.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.1 MB link
ENCFF869RDN ENCFF869RDN.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.8 MB link
ENCFF242QQJ ENCFF242QQJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 10.4 MB link
ENCFF979RKC ENCFF979RKC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 13.0 MB link
ENCFF281ELS ENCFF281ELS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 10.5 MB link
ENCFF591LPY ENCFF591LPY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 13.1 MB link
ENCFF435YMY ENCFF435YMY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 13.6 MB link
ENCFF569LQN ENCFF569LQN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 10.8 MB link
ENCFF450IVA ENCFF450IVA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 10.9 MB link
ENCFF619APF ENCFF619APF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 13.7 MB link
ENCFF147JYD ENCFF147JYD.fastq fastq (reads) reads 200.7 MB link
ENCFF218BOC ENCFF218BOC.fastq fastq (reads) reads 254.6 MB link
ENCFF661TYX ENCFF661TYX.fastq fastq (reads) reads 225.0 MB link
ENCFF734UEC ENCFF734UEC.fastq fastq (reads) reads 178.5 MB link