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  1. Imaging Cellular Metabolic Rewiring with SuMMIT-SRS.

    bioRxiv : the preprint server for biology · 2025

    Cells dynamically rewire their metabolic pathways in response to physiological and pathological cues. Such plasticity is particularly critical in neurons, stem cells, cancer cells, and immune cells, where biosynthetic demands can shift rapidly. However, current metabolic imaging techniques using isotope …

    PMID 41279865 DOI ↗

Datasets 25+

ENCSR222MYK ENCSR · ENCODE

SRSF7 ChIP-seq in K562

Homo sapiens

ENCSR465BWW ENCSR · ENCODE

SRSF1 ChIP-seq in HepG2

Homo sapiens

ENCSR624GNZ ENCSR · ENCODE

SRSF9 ChIP-seq on HepG2

Homo sapiens

ENCSR832DMO ENCSR · ENCODE

SRSF1 ChIP-seq in K562

Homo sapiens

ENCSR268QIQ ENCSR · ENCODE

SRSF3 ChIP-seq in K562

Homo sapiens

ENCSR696MBC ENCSR · ENCODE

SRSF4 ChIP-seq on HepG2

Homo sapiens

ENCSR073DSH ENCSR · ENCODE

RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF11

ENCSR376FGR ENCSR · ENCODE

RNA-seq on HepG2 cells treated with an shRNA knockdown against SRSF3. (SRSF3_BGHLV35)

Homo sapiens

ENCSR925TYQ ENCSR · ENCODE

eCLIP control experiment on K562 against SRSF1

Homo sapiens

ENCSR914PGB ENCSR · ENCODE

RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF5

ENCSR893LEC ENCSR · ENCODE

SRSF3 ChIP-seq on HepG2

Homo sapiens

ENCSR744POX ENCSR · ENCODE

RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF10

ENCSR464ADT ENCSR · ENCODE

shRNA knockdown against SRSF7 in K562 cells followed by RNA-seq. (SRSF7-LV11)

Homo sapiens

ENCSR060VZF ENCSR · ENCODE

eCLIP control experiment on HepG2 against SRSF9

Homo sapiens

ENCSR845MNM ENCSR · ENCODE

RNA-seq on HepG2 cells treated with a CRISPR gRNA against SRSF7. (SRSF7_BGHcLV03)

Homo sapiens

ENCSR275JFN ENCSR · ENCODE

RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF2

ENCSR694VQW ENCSR · ENCODE

RNA Bind-n-Seq (RBNS) input control experiment of SRSF2

ENCSR960GMF ENCSR · ENCODE

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of SRSF2

ENCSR187FJB ENCSR · ENCODE

RNA Bind-n-Seq (RBNS) input control experiment of SRSF10

ENCSR876NDK ENCSR · ENCODE

RNA Bind-n-Seq (RBNS) input control experiment of SRSF5 or TAF15

ENCSR418ZPZ ENCSR · ENCODE

RNA Bind-n-Seq (RBNS) input control experiment of SRSF11

ENCSR234LUY ENCSR · ENCODE

RNA Bind-n-Seq (RBNS) input control experiment of SRSF4

ENCSR252RIJ ENCSR · ENCODE

RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF4

ENCSR468FSW ENCSR · ENCODE

eCLIP experiment on K562 against SRSF7

Homo sapiens

ENCSR513NDD ENCSR · ENCODE

eCLIP experiment on HepG2 against SRSF7

Homo sapiens

Showing first 25 dataset results.

Analyses 3

GSE147005 Processing Pipeline

GSE147005 · 4 steps · RNA-Seq · code_examples

Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. (2023)

GSE179634 Processing Pipeline

GSE179634 · 32 steps · RIP-Seq · code_examples

Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. (2023)

GSE113193 Processing Pipeline

GSE113193 · 32 steps · OTHER · code_examples

Tissue-selective restriction of RNA editing of CaV1.3 by splicing factor SRSF9. (2018)